For the LEDs, I thought it was a good place but actually, yes it does not necesarily need to be in front of the MOSFETs.
@Pablo2048 Yes, I have to admit that it is much better
For the EMI filter, the DSS6NC52A471Q55B, I can just add the one you suggested but I don't know on what characteristics you based your choice and I'd like to .
Again thank you all for the help you provided and for your patience, i've learnt a lot of things in PCB design.
You are right about the flyback diodes, it would certainly prevent the arc from the coil to the spark plug because current would not be completely cut at the primary.
Here, the danger is only for the MOSFET, right ?
What I might do is use a MOSFET like the SIHA22N60EF-GE3 which can handle 600V Vds and should not cause any problem to be activated because I now have a driver.